- phyloseq::GlobalPatterns(Data) Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample (2011)
- phyloseq::enterotype(Data) Enterotypes of the human gut microbiome (2011)
- phyloseq::esophagus(Data) Small example dataset from a human esophageal community (2004)
- phyloseq::soilrep(Data) Reproducibility of soil microbiome data (2011)